A B C D E F G H I J K L M N O P Q R S T U V W Z

B

BackgroundIon<gPeak extends Peak> - Class in peakml

Implementation of a background ion, useable for all types of mass spectrometry (e.g.

BackgroundIon(PeakData<gPeak>) - Constructor for class peakml.BackgroundIon

Base64 - Class in peakml.util

Encodes and decodes to and from Base64 notation.

Base64.InputStream - Class in peakml.util

A Base64.InputStream will read data from another java.io.InputStream, given in the constructor, and encode/decode to/from Base64 notation on the fly.

Base64.InputStream(InputStream) - Constructor for class peakml.util.Base64.InputStream

Constructs a Base64.InputStream in DECODE mode.

Base64.InputStream(InputStream, int) - Constructor for class peakml.util.Base64.InputStream

Constructs a Base64.InputStream in either ENCODE or DECODE mode.

Base64.OutputStream - Class in peakml.util

A Base64.OutputStream will write data to another java.io.OutputStream, given in the constructor, and encode/decode to/from Base64 notation on the fly.

Base64.OutputStream(OutputStream) - Constructor for class peakml.util.Base64.OutputStream

Constructs a Base64.OutputStream in ENCODE mode.

Base64.OutputStream(OutputStream, int) - Constructor for class peakml.util.Base64.OutputStream

Constructs a Base64.OutputStream in either ENCODE or DECODE mode.

beta(double, double) - Static method in class peakml.math.Statistical

betacf(double, double, double) - Static method in class peakml.math.Statistical

betai(double, double, double) - Static method in class peakml.math.Statistical

BinArray - Class in peakml.math

This class can be used for collecting numerical information into bins.

BinArray(int, double, double) - Constructor for class peakml.math.BinArray

binomialln(int, int) - Static method in class peakml.math.Statistical

A binomial is a polynomial with two terms—the sum of two monomials—often bound by parenthesis or brackets when operated upon.

BIOLOGICAL_REPLICATES - Static variable in class peakml.io.SetInfo

Type indicating that this set is used to combine biological replicates (either files or sets)

BROMIDE - Static variable in class peakml.chemistry.PeriodicTable

The index of the bromide element in the PeriodicTable.elements array.

BROMINE - Static variable in class peakml.chemistry.PeriodicTable

The index of the bromine element in the PeriodicTable.elements array.

ByteArray - Class in peakml.util

Utility functions for converting arrays of basic types into an array of bytes and vica-versa, which is especially useful for storing large amounts of data into a binary file.

ByteArray() - Constructor for class peakml.util.ByteArray