Hierarchy For All Packages

Package Hierarchies:

peakml, peakml.chemistry, peakml.graphics, peakml.io, peakml.io.chemistry, peakml.io.dac, peakml.io.mzml, peakml.io.mzxml, peakml.io.peakml, peakml.io.xrawfile, peakml.math, peakml.math.filter, peakml.math.function, peakml.math.wavelet, peakml.util, peakml.util.jfreechart, peakml.util.rjava, peakml.util.swt, peakml.util.swt.dialog, peakml.util.swt.widget

Class Hierarchy

• java.lang.Object
  • peakml.Annotatable
    • peakml.io.FileInfo
    • peakml.io.Header
    • peakml.IPeak
      • peakml.BackgroundIon<gPeak> (implements java.lang.Iterable<T>)
      • peakml.IPeakSet<Type> (implements java.lang.Iterable<T>, peakml.Measurement)
      • peakml.MassChromatogram<gPeak> (implements java.lang.Iterable<T>)
      • peakml.Peak
        • peakml.Centroid
      • peakml.Spectrum<gPeak> (implements java.lang.Iterable<T>, peakml.Measurement)
    • peakml.io.MeasurementInfo
    • peakml.io.SampleInfo
    • peakml.io.ScanInfo
  • peakml.Annotation
  • peakml.io.ApplicationInfo
  • org.jfree.chart.axis.Axis (implements java.lang.Cloneable, java.io.Serializable)
    • org.jfree.chart.axis.ValueAxis (implements java.lang.Cloneable, org.jfree.util.PublicCloneable, java.io.Serializable)
      • org.jfree.chart.axis.NumberAxis (implements java.lang.Cloneable, java.io.Serializable)
        • peakml.util.jfreechart.LognAxis
  • peakml.util.Base64
  • peakml.math.BinArray
  • peakml.util.ByteArray
  • peakml.Centroid.Factory (implements peakml.PeakData.PeakFactory<gPeak>)
  • peakml.ChromatographyMS<gPeak> (implements java.lang.Iterable<T>, peakml.Measurement)
  • peakml.graphics.Colormap
  • peakml.math.wavelet.ContinuousWaveletTransform
  • peakml.math.function.CubicSplineFunction (implements peakml.math.function.Function)
  • peakml.io.dac.DAC
  • peakml.io.dac.DACCalibrationInfo
  • peakml.io.dac.DACCalibrationInfo.DynamicParams
  • peakml.io.dac.DACCalibrationInfo.FastParams
  • peakml.io.dac.DACCalibrationInfo.StaticFunction
  • peakml.io.dac.DACCalibrationInfo.StaticParams
  • peakml.io.dac.DACExperimentInfo
  • peakml.io.dac.DACExperimentInfo.ExFunctionInfo
  • peakml.io.dac.DACExScanStats
  • peakml.io.dac.DACFunctionInfo
  • peakml.io.dac.DACHeader
  • peakml.io.dac.DACParser
  • peakml.io.dac.DACProcessInfo
  • peakml.io.dac.DACScanStats
  • peakml.io.dac.DACSpectrum
  • peakml.math.DataFrame
    • peakml.math.DataFrame.Double
  • peakml.util.DataTypes
  • org.eclipse.swt.widgets.Dialog
    • peakml.util.swt.dialog.ProgressDialog
  • peakml.util.jfreechart.FastErrorBarPlot.Data
  • peakml.util.jfreechart.FastSpectrumPlot.Data
  • peakml.util.jfreechart.FastTimePlot.Data
  • java.io.InputStream (implements java.io.Closeable)
    • java.io.FilterInputStream
      • peakml.util.Base64.InputStream
  • peakml.util.IO
  • peakml.IPeak.AnnotationAscending (implements java.util.Comparator<T>)
  • peakml.IPeak.AnnotationDescending (implements java.util.Comparator<T>)
  • peakml.io.xrawfile.IXRawfile
  • peakml.io.xrawfile.IXRawfile.Controller
  • peakml.io.xrawfile.IXRawfile.Label
  • peakml.io.xrawfile.IXRawfile.Noise
  • peakml.io.xrawfile.IXRawfile.PrecursorInfo
  • peakml.io.xrawfile.IXRawfile.ScanHeaderInfo
  • peakml.io.xrawfile.IXRawParser
  • peakml.graphics.JFreeChartTools
  • jaolho.data.lma.LMAFunction
    • peakml.math.function.LinearFunction (implements peakml.math.function.Function)
    • peakml.math.function.LogNormalFunction (implements peakml.math.function.Function)
    • peakml.math.function.NormalFunction
    • peakml.math.function.PolynomialFunction (implements peakml.math.function.Function)
  • peakml.math.filter.LoessFilter (implements peakml.math.filter.Filter)
  • peakml.chemistry.MolecularFormula
  • peakml.chemistry.MolecularFormula.SubFormula
  • peakml.chemistry.Molecule
  • peakml.chemistry.MoleculeDB
  • peakml.io.chemistry.MoleculeIO
  • peakml.io.mzml.MZMLParser
  • peakml.io.mzml.MZMLWriter
  • peakml.io.mzxml.MzXmlParser
  • peakml.io.mzxml.MzXmlWriter
  • java.io.OutputStream (implements java.io.Closeable, java.io.Flushable)
    • java.io.FilterOutputStream
      • peakml.util.Base64.OutputStream
  • peakml.io.ParseResult
  • peakml.PeakData<gPeak> (implements java.lang.Iterable<T>)
  • peakml.PeakDataIterator<gPeak> (implements java.util.Iterator<E>)
  • peakml.io.peakml.PeakMLParser
  • peakml.io.peakml.PeakMLWriter
  • peakml.chemistry.PeriodicTable
  • peakml.chemistry.PeriodicTable.Derivative
  • peakml.chemistry.PeriodicTable.Element
  • peakml.chemistry.PeriodicTable.Isotope
  • peakml.chemistry.PeriodicTable.NaturalIsotope
  • org.jfree.chart.plot.Plot (implements org.jfree.chart.event.AxisChangeListener, java.lang.Cloneable, org.jfree.data.general.DatasetChangeListener, org.jfree.chart.LegendItemSource, org.jfree.chart.event.MarkerChangeListener, org.jfree.util.PublicCloneable, java.io.Serializable)
    • org.jfree.chart.plot.CategoryPlot (implements java.lang.Cloneable, org.jfree.chart.plot.Pannable, org.jfree.util.PublicCloneable, org.jfree.chart.event.RendererChangeListener, java.io.Serializable, org.jfree.chart.plot.ValueAxisPlot, org.jfree.chart.plot.Zoomable)
      • peakml.util.jfreechart.FastErrorBarPlot
    • peakml.util.jfreechart.FastSpectrumPlot (implements org.jfree.chart.plot.Pannable, org.jfree.chart.plot.Zoomable)
    • peakml.util.jfreechart.FastTimePlot (implements org.jfree.chart.plot.Pannable, org.jfree.chart.plot.Zoomable)
  • peakml.util.rjava.Project
  • peakml.chemistry.Protein
  • peakml.math.filter.SavitzkyGolayFilter (implements peakml.math.filter.Filter)
  • peakml.io.SetInfo
  • peakml.math.Signal
  • peakml.math.Signal.Extremes
  • peakml.math.Statistical
  • peakml.util.swt.SWTTools
  • java.lang.Throwable (implements java.io.Serializable)
    • java.lang.Exception
      • peakml.io.xrawfile.IXRawfileException
  • peakml.TotalIonCount
  • peakml.Version
  • peakml.io.Vocabulary (implements java.lang.Iterable<T>)
  • peakml.io.Vocabulary.Term
  • peakml.math.wavelet.Wavelet
    • peakml.math.wavelet.MarrWavelet
    • peakml.math.wavelet.TemplateWavelet
  • org.eclipse.swt.widgets.Widget
    • org.eclipse.swt.widgets.Control (implements org.eclipse.swt.graphics.Drawable)
      • org.eclipse.swt.widgets.Scrollable
        • org.eclipse.swt.widgets.Composite
          • peakml.util.swt.widget.DerivativeGraph
          • peakml.util.swt.widget.IntensityTrendGraph
          • peakml.util.swt.widget.IPeakGraph
          • peakml.util.swt.widget.TimePlot

Interface Hierarchy

• peakml.math.filter.Filter
• peakml.math.function.Function
• peakml.IPeak.MatchCompare<Type>
• peakml.IPeak.RelationCompare<Type>
• peakml.MassChromatogram.MassCalculator<Type>
• peakml.Measurement
• peakml.io.ParserProgressListener
• peakml.PeakData.PeakFactory<gPeak>
• peakml.io.peakml.PeakMLProgressListener
• peakml.io.WriterProgressListener

Enum Hierarchy

• java.lang.Object
  • java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
    • peakml.chemistry.Protein.Type
    • peakml.chemistry.Polarity
    • peakml.chemistry.Mass
    • peakml.math.filter.SavitzkyGolayFilter.Points
    • peakml.Spectrum.Type
    • peakml.Spectrum.DataFormat
    • peakml.Annotation.ValueType