mzMatch/PeakML: metabolomics data analysis
mzMatch is a modular, open source and platform independent data processing pipeline for metabolomics LC/MS
data written in the Java language. It was designed
to provide small tools for the common processing tasks for LC/MS data. The mzMatch environment was based
entirely on the PeakML file format and core library, which provides a common framework for all the tools.
With the introduction of the PeakML file format, the tools can share their data output with the other software.
This means that we can integrate with other tools, for which we provide a first
implementation integration mzMatch with XCMS.
Richard A. Scheltema, Andris Jankevics, Ritsert C. Jansen, Morris A. Swertz, and Rainer Breitling
Analytical Chemistry 2011 83 (7), pp 2786-2793
Andris Jankevics, Maria Elena Merlo, Marcel de Vries, Roel J. Vonk, Eriko Takano, and Rainer Breitling
Metabolomics 2012 8 (1), pp 29-36 IDEOM: An Excel interface for analysis of LC-MS based metabolomics data
Darren J. Creek, Andris Jankevics, Karl E.V. Burgess, Rainer Breitling and Michael P. Barrett
Bioinformatics 2012 In Press Towards Global Metabolomics Analysis with Liquid Chromatography–Mass Spectrometry: Improved Metabolite Identification by Retention Time Prediction
Darren J. Creek , Andris Jankevics , Rainer Breitling , David G. Watson , Michael P. Barrett , and Karl E.V. Burgess
Analytical Chemistry 2011 83 (22), pp 8703-8710 Metabolomic analysis of a synthetic metabolic switch in Streptomyces coelicolor A3(2)
Andris Jankevics, M. Elena Merlo, Marcel de Vries, Roel J. Vonk, Eriko Takano, Rainer Breitling
Proteomics 2011 11 (24), pp 4622-4631
|Design based on the SWT pages.|