Uses of Class
peakml.io.xrawfile.IXRawfileException

Packages that use IXRawfileException
peakml.io   
peakml.io.xrawfile   
 

Uses of IXRawfileException in peakml.io
 

Methods in peakml.io that throw IXRawfileException
static ParseResult ParseResult.parse(java.lang.String filename)
          Calls the correct parse function based on the filename extension.
 

Uses of IXRawfileException in peakml.io.xrawfile
 

Methods in peakml.io.xrawfile that throw IXRawfileException
 void IXRawfile.close()
          Closes a raw file and frees the associated memory.
 int IXRawfile.getControllerType(int index)
          Returns the type of the device controller registered at the specified index position in the raw file.
 java.lang.String IXRawfile.getCreationDate()
          Returns the file creation date in DATE format.
 java.lang.String IXRawfile.getCreatorID()
          Returns the creator ID.
 IXRawfile.Controller IXRawfile.getCurrentController()
          Gets the current controller type and number for the raw file.
 double IXRawfile.getEndTime()
          Gets the start time of the last scan or reading for the current controller.
 java.lang.String IXRawfile.getErrorLogItem(int itemnumber)
          Returns the specified error log item information and the retention time at which the error occurred.
 java.lang.String IXRawfile.getErrorMessage()
          Returns the last error message that was recorded by the Thermo OLE DLL.
 java.lang.String IXRawfile.getFileName()
          Returns the fully qualified path name of an open raw file.
 java.lang.String IXRawfile.getFilterForScanNum(int scannumber)
          Returns the closest matching run time that corresponds to nScanNumber for the current controller.
 java.lang.String IXRawfile.getFilterForScanRT(double retentiontime)
          Returns the closest matching run time that corresponds to nScanNumber for the current controller.
 java.lang.String[] IXRawfile.getFilters()
          Returns the list of unique scan filters for the raw file.
 int IXRawfile.getFirstSpectrumNumber()
          Gets the first scan or reading number for the current controller.
 double IXRawfile.getHighMass()
          Gets the highest mass or wavelength recorded for the current controller.
 int IXRawfile.getInletID()
          Gets the inlet ID number for the current controller.
 java.lang.String IXRawfile.getInstChannelLabel(int channelnumber)
          Returns the channel label, if available, at the specified index for the current controller.
 java.lang.String IXRawfile.getInstFlags()
          Returns the experiment flags, if available, for the current controller.
 java.lang.String IXRawfile.getInstHardwareVersion()
          Returns the current controller hardware or firmware revision information, if available.
 java.lang.String IXRawfile.GetInstMethod(int methoditem)
          Returns the channel label, if available, at the specified index for the current controller.
 java.lang.String IXRawfile.getInstModel()
          Returns the instrument model, if available, for the current controller.
 java.lang.String IXRawfile.getInstName()
          Returns the instrument name, if available, for the current controller.
 int IXRawfile.getInstNumChannelLabels()
          Returns the number of channel labels specified for the current controller.
 int IXRawfile.getInstrumentID()
          Gets the instrument ID number for the current controller.
 java.lang.String IXRawfile.getInstSerialNumber()
          Returns the serial number, if available, for the current controller.
 java.lang.String IXRawfile.getInstSoftwareVersion()
          Returns the current controller software revision information, if available.
 java.util.Vector<IXRawfile.Label> IXRawfile.getLabelData(int scannumber)
          This method enables you to read the FT-PROFILE labels of a scan represented by the scanNumber.
 int IXRawfile.getLastSpectrumNumber()
          Gets the last scan or reading number for the current controller.
 double IXRawfile.getLowMass()
          Gets the lowest mass or wavelength recorded for the current controller.
 double[] IXRawfile.getMassListFromScanNum(int scannumber, boolean centroid)
          Returns the mass list array.
 double IXRawfile.getMassResolution()
          Gets the mass resolution value recorded for the current controller.
 int IXRawfile.getMaxIntensity()
          Gets the highest base peak of all the scans for the current controller.
 java.util.Vector<IXRawfile.Noise> IXRawfile.getNoiseData(int scannumber)
           
 int IXRawfile.getNumberOfControllers()
          Returns the number of registered device controllers in the raw file.
 int IXRawfile.getNumberOfControllersOfType(int type)
          Returns the number of registered device controllers of a particular type in the raw file.
 int IXRawfile.getNumErrorLog()
          Gets the number of error log entries recorded for the current controller.
 int IXRawfile.getNumInstMethods()
          Returns the number of instrument methods contained in the raw file.
 int IXRawfile.getNumSpectra()
          Gets the number of spectra acquired by the current controller.
 int IXRawfile.getNumStatusLog()
          Gets the number of status log entries recorded for the current controller.
 int IXRawfile.getNumTrailerExtra()
          Gets the trailer extra entries recorded for the current controller.
 int IXRawfile.getNumTuneData()
          Gets the number of tune data entries recorded for the current controller.
 IXRawfile.PrecursorInfo[] IXRawfile.getPrecursorInfoFromScanNum(int scannumber)
          This function is used to retrieve information about the parent scans of a data dependent MSn scan.
 IXRawfile.ScanHeaderInfo IXRawfile.getScanHeaderInfoForScanNum(int scannumber)
          For a given scan number, this function returns information from the scan header for the current controller.
 double IXRawfile.getStartTime()
          Gets the start time of the first scan or reading for the current controller.
 java.util.HashMap<java.lang.String,java.lang.String> IXRawfile.getStatusLogForScanNum(int scannumber)
          Returns the recorded status log entry labels and values for the current controller.
 java.lang.String[] IXRawfile.getStatusLogLabelsForScanNum(int scannumber)
          Returns the recorded status log entry labels for the current controller.
 java.lang.String IXRawfile.getStatusLogValueForScanNum(int scannumber, java.lang.String label)
          Returns the recorded status log parameter value for the specified status log parameter label for the current controller.
 java.util.HashMap<java.lang.String,java.lang.String> IXRawfile.getTrailerExtraForScanNum(int scannumber)
          Returns the recorded trailer extra entry labels and values for the current controller.
 java.util.HashMap<java.lang.String,java.lang.String> IXRawfile.getTuneData(int segmentnumber)
          Returns the recorded tune parameter labels and values for the current controller.
 int IXRawfile.getVersionNumber()
          Returns the file format version number.
 boolean IXRawfile.isCentroidScanForScanNum(int scannumber)
          Returns TRUE if the scan specified by nScanNumber is a centroid scan, FALSE if the scan is a profile scan.
 boolean IXRawfile.isProfileScanForScanNum(int scannumber)
          Returns TRUE if the scan specified by nScanNumber is a profile scan, FALSE if the scan is a centroid scan.
 void IXRawfile.open(java.lang.String filename)
          Opens a raw file for reading only.
static ParseResult IXRawParser.parse(java.lang.String filename)
           
 double IXRawfile.rtFromScanNum(int scannumber)
          Returns the closest matching run time or retention time that corresponds to nScanNumber for the current controller.
 int IXRawfile.scanNumFromRT(double retentiontime)
          Returns the closest matching scan number that corresponds to dRT for the current controller.
 void IXRawfile.setCurrentController(int controllertype, int controllernumber)
          Sets the current controller in the raw file.