mzmatch version: 1.0.2
author: RA Scheltema (email@example.com)
Extracts the status-logs from the given Thermo RAW files (for convenience it also includes the trailer-extra logs) and outputs the logs of each controller in a separate file stored in the RAW file into a separate tab-delimited text-file. The columns contain the different types of logs stored and the rows the values for each scan. The fact that a single RAW file can contain multiple controllers, necessitates that the output is a directory where multiple files can be written.
No warrenties are given about the contents, as this seems to be largely dependent on which machine was used.
SET JAVA=java -cp mzmatch.jar -da -dsa -Xmn1g -Xms1425m -Xmx1425m -Xss128k -XX:+UseParallelGC -XX:ParallelGCThreads=10
REM extract the log-information
%JAVA% mzmatch.ipeak.util.ThermoStatusLog -i measurement.RAW -o measurement.log
* per option:  denotes multiple input values; <> denotes a single input value
||Option for the input file(s). These should be in the Thermo Raw file format produced by Xcalibur.
||Option for the output destination. This is required to be a directory where all of the generated files are written. When the directory (or path leading to the directory does not exist, it is created). For the filename convention used for the ouput files, see the general description.
||When this is set, the help is shown.
||When this is set, the progress is shown on the standard output.