mzmatch.ipeak.util
ExtractSets
version: 1.0.0
mzmatch version: 1.0.2
author: RA Scheltema (r.a.scheltema@rug.nl)
mzmatch.ipeak.util.ExtractSets
This tool extracts the entries of the given setnames (stored in the header) from the given PeakML file and stores the result in the output file.
Example(s)
Windows batch-file:
SET JAVA=java -cp mzmatch.jar -da -dsa -Xmn1g -Xms1425m -Xmx1425m -Xss128k -XX:+UseParallelGC -XX:ParallelGCThreads=10
REM extract the sets combinationa & combinationc
%JAVA% mzmatch.ipeak.util.ExtractSets -i combined.peakml -setnames "conditiona,conditionc" -o combined_ac.peakml
References:
Commandline options* |
-i <filename> |
The input file (in PeakML format). When this option is not set the input is read from the standard input. |
-o <filename> |
The output file (in PeakML format). When this option is not set the output is written to the standard output. |
-setnames [[string]] |
The list of set names to extract. |
-h |
When this is set, the help is shown. |
-v |
When this is set, the progress is shown on the standard output. |
* per option: [] denotes multiple input values; <> denotes a single input value