mzmatch.ipeak.util
ExtractSets

version: 1.0.0
mzmatch version: 1.0.2
author: RA Scheltema (r.a.scheltema@rug.nl)


mzmatch.ipeak.util.ExtractSets
This tool extracts the entries of the given setnames (stored in the header) from the given PeakML file and stores the result in the output file.

Example(s)

Windows batch-file:
SET JAVA=java -cp mzmatch.jar -da -dsa -Xmn1g -Xms1425m -Xmx1425m -Xss128k -XX:+UseParallelGC -XX:ParallelGCThreads=10

REM extract the sets combinationa & combinationc
%JAVA% mzmatch.ipeak.util.ExtractSets -i combined.peakml -setnames "conditiona,conditionc" -o combined_ac.peakml

References:


Commandline options*
-i <filename> The input file (in PeakML format). When this option is not set the input is read from the standard input.
-o <filename> The output file (in PeakML format). When this option is not set the output is written to the standard output.
-setnames [[string]] The list of set names to extract.
-h   When this is set, the help is shown.
-v   When this is set, the progress is shown on the standard output.
* per option: [] denotes multiple input values; <> denotes a single input value