version: 1.0.0
mzmatch version: 1.0.2
author: RA Scheltema (

Splits the derivative clusters found by mzmatch.ipeak.sort.RelatedPeaks into separate files. Each file is named with the found in the annotations.


Windows batch-file:
SET JAVA=java -cp mzmatch.jar -da -dsa -Xmn1g -Xms1425m -Xmx1425m -Xss128k -XX:+UseParallelGC -XX:ParallelGCThreads=10

REM extract all the mass chromatograms
%JAVA% mzmatch.ipeak.ExtractMassChromatograms -v -i related.peakml -o derivatives\


Commandline options*
-i <filename> The input file (in PeakML format), resulting from the tool mzmatch.ipeak.sort.RelatedPeaks. When this option is not set the input is read from the standard input.
-o <filename> Specifies the output directory where all the PeakML files are written with the clusters of derivatives.
-h   When this is set, the help is shown.
-v   When this is set, the progress is shown on the standard output.
* per option: [] denotes multiple input values; <> denotes a single input value