mzmatch version: 1.0.2
author: RA Scheltema (email@example.com)
Splits the derivative clusters found by mzmatch.ipeak.sort.RelatedPeaks into separate files. Each file is named with the relation.id found in the annotations.
SET JAVA=java -cp mzmatch.jar -da -dsa -Xmn1g -Xms1425m -Xmx1425m -Xss128k -XX:+UseParallelGC -XX:ParallelGCThreads=10
REM extract all the mass chromatograms
%JAVA% mzmatch.ipeak.ExtractMassChromatograms -v -i related.peakml -o derivatives\
* per option:  denotes multiple input values; <> denotes a single input value
||The input file (in PeakML format), resulting from the tool mzmatch.ipeak.sort.RelatedPeaks. When this option is not set the input is read from the standard input.
||Specifies the output directory where all the PeakML files are written with the clusters of derivatives.
||When this is set, the help is shown.
||When this is set, the progress is shown on the standard output.