Commandline options* |
-i [filename] |
Option for the input file(s). The only allowed format is PeakML and when it is not set the input is read from standard in. |
-relationids <filename> |
Either a text-file with the relation-id's (1 id per line) or a PeakML file with entries containing the id's to filter on. |
-o <filename> |
Option for the ouput file(s). The file is written in the PeakML file format and peaks that passed the defined filter are saved here. When this option is not set the output is written to the standard out. Be sure to unset the verbose option when setting up a pipeline reading and writing from the standard in- and outputs. When multiple input files are defined this option needs to point to a directory. |
-rejected <filename> |
Option for the reject file. The file is written in the PeakML file format and peaks that have not passed the defined filter are saved here. |
-h |
When this is set, the help is shown. |
-v |
When this is set, the progress is shown on the standard output. |